rs29498676 SNP Detail

Summary

• ID
  rs29498676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84492787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAC TGTTTCTAAG GCTTTCGAGT
  K
  AAAGAAGAGA TGGAATGGTG GTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39571765	mCV23110565	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss146132062	ENSMUSSNP7204856	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29498676					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84492787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	239 bp proximal
Rr1582	regulatory region 1582	1559 bp downstream
Rr340271	regulatory region 340271	within coordinates
Tssr146043	transcription start site region 146043	1587 bp downstream
Tssr146044	transcription start site region 146044	387 bp upstream
Tssr146045	transcription start site region 146045	1731 bp upstream
Tssr149649	transcription start site region 149649	1767 bp upstream
Tssr149650	transcription start site region 149650	205 bp downstream
Tssr149651	transcription start site region 149651	243 bp downstream
Tssr149652	transcription start site region 149652	628 bp downstream
Tssr149653	transcription start site region 149653	676 bp downstream
Tssr149654	transcription start site region 149654	816 bp downstream
Tssr149655	transcription start site region 149655	912 bp downstream
Tssr149656	transcription start site region 149656	1002 bp downstream
Tssr149657	transcription start site region 149657	1218 bp downstream
Tssr149658	transcription start site region 149658	1275 bp downstream
Tssr149659	transcription start site region 149659	1310 bp downstream
Tssr149660	transcription start site region 149660	1341 bp downstream
Tssr149661	transcription start site region 149661	1390 bp downstream
Tssr149662	transcription start site region 149662	1449 bp downstream
Tssr149663	transcription start site region 149663	1513 bp downstream
Tssr149664	transcription start site region 149664	1554 bp downstream
Tssr149665	transcription start site region 149665	1599 bp downstream
Tssr149666	transcription start site region 149666	1668 bp downstream
Tssr149667	transcription start site region 149667	1757 bp downstream
Tssr149668	transcription start site region 149668	1812 bp downstream
Tssr149669	transcription start site region 149669	1845 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates