rs29499140 SNP Detail

Summary

• ID
  rs29499140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6183832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTTAACA CTAGGTTTTA ACTTTTTCTA ATTAAGGCAA
  AAACCAAAGT CAGTGAAGTT TTCTTGTTTG GCCCAGGTTT TTCTTTGCTT TACTGTTGCT
  R
  CACTGCCTGT GCTACTAGGC ACACAGTTGC ATCAAGATTC TCTCAGCTCT GCCTTGAGTA
  CTTGTTGGCT AATGTTTGTG GCATTGATCT TTTCATAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39573447	mCV22811252	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss60525294	NES16542697	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	A	A		A	A		A
ss145081492	ENSMUSSNP6616983	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss325290127	CHEV_17_6133557	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29499140					SNP	A	A	G	G	G	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525294	NES16542697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6183832 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	1152 bp upstream
Gm55175	predicted gene, 55175	1613 bp upstream
Gm66616	predicted gene, 66616	944 bp downstream
Rr521311	regulatory region 521311	945 bp distal
Tulp4	TUB like protein 4	within coordinates