rs29499189 SNP Detail

Summary

• ID
  rs29499189
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23896384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT GCGGCAGAGA CCGCGGCCAA
  S
  CCGAAGCCAT GATTGCCGGT CCCGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39572145	mCV24340155	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss145330325	ENSMUSSNP3415503	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325326757	CHEV_17_23814377	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29499189					SNP	C	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23896384 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	1961 bp upstream
Cpgi8683	CpG island 8683	within coordinates
Cpgi8684	CpG island 8684	1882 bp proximal
Rr523105	regulatory region 523105	1507 bp distal
Rr523106	regulatory region 523106	1125 bp distal
Rr523107	regulatory region 523107	within coordinates
Rr523108	regulatory region 523108	1506 bp proximal
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	within coordinates
Tssr142943	transcription start site region 142943	1953 bp upstream
Tssr146638	transcription start site region 146638	1522 bp upstream
Tssr146639	transcription start site region 146639	827 bp upstream
Tssr146640	transcription start site region 146640	781 bp upstream
Tssr146641	transcription start site region 146641	764 bp upstream
Tssr146642	transcription start site region 146642	726 bp upstream
Tssr146643	transcription start site region 146643	22 bp downstream
Tssr146644	transcription start site region 146644	67 bp downstream