rs29499512 SNP Detail

Summary

• ID
  rs29499512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31276267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGC TGCCTCAATT TAGGGTCACC
  S
  CACACTAGCG CTAAGGGAAA AGCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39572458	mCV24388997	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss145455222	ENSMUSSNP5934221	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss325358443	CHEV_17_31194238	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29499512					SNP	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss159831840	UOL_MMUSEQ_401	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31276267 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	401 bp upstream
Cpgi8940	CpG island 8940	within coordinates
Rr525355	regulatory region 525355	within coordinates
Rr525356	regulatory region 525356	445 bp proximal
Rr525357	regulatory region 525357	770 bp proximal
Rr525358	regulatory region 525358	970 bp proximal
Tssr143637	transcription start site region 143637	393 bp upstream
Tssr143638	transcription start site region 143638	411 bp upstream
Tssr143639	transcription start site region 143639	426 bp upstream
Tssr143640	transcription start site region 143640	447 bp upstream
Tssr143641	transcription start site region 143641	475 bp upstream