rs29499767 SNP Detail

Summary

• ID
  rs29499767
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87742083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGAGCTA AATCCCCAAC
  CCCCACACTT GATTTTTATA TCAGTTAGGT CAAAAGTCAA TTGTAACCTC AGTGCAACAA
  CTGCTTTAAC TTTTATAAGG CTAACATTTA TGCAGCTTAC AACTGTTACG TCGTGAAAAA
  GTGAAAGGCA AAAAGAAGTC CTTTCCATTT CTAAAAGCCT CACTTCCTGG GCAGCCATCT
  S
  AATTTCAAGT AACCAAGATA TTTTTTAATT AAAACCATTC CAGATTGGAA TCAGAAAGAA
  AAAACAGAAC CTAGTCACAT ACAGTCTGTT AATTTCATTT TAGGAAATTC ACAGTAAAAT
  TTCAAACTTT TAAAATGATC CCATCACCTT CTACAAAAAC TGCACAGCTC CGTCCAAATG
  TTAACAACTT GTTACAGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39571219	mCV22771355	ABI	CRAMUS_MOUSE	f	SNP	G	C					C
ss48385168	NES12275550	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C		G	C	C	C	G	C	C	C	G
ss146179874	ENSMUSSNP4034183	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29499767					SNP	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48385168	NES12275550	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87742083 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	within coordinates
Tssr149769	transcription start site region 149769	705 bp upstream