rs29499850 SNP Detail

Summary

• ID
  rs29499850
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139897013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCAAATT ATCCCTGTCA AAAGACTGCC ACAGGATGAC
  AGACTGCTGA TGAGTGTAAC CTGACATCTC TTTATAAGAC AACATCTGTT CACAATTTAT
  W
  TCTTCTTTTT CTCCTCTCAT AACCTGTCAC CACCTCCCTG ACAGGTATCT CAAACTGCTC
  TTTCTATAGC TCAAAAGATG TCAACCATCT GGCCCTTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45319929	mCV24491683	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss147670413	ENSMUSSNP2226519	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29499850					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139897013 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	914 bp upstream
Tssr20477	transcription start site region 20477	942 bp upstream
Tssr20478	transcription start site region 20478	959 bp upstream