rs29500663 SNP Detail

Summary

• ID
  rs29500663
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69690320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT ATTTAACTTT TTAATTATTT
  K
  GTGGTACACA TATAGTCGAT TCTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45320644	mCV25170085	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss146730531	ENSMUSSNP3423093	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320332349	CHEV_2_69698033	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29500663					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69690320 () rs orientation: forward

Symbol	Name	Function Class
Rr397021	regulatory region 397021	381 bp upstream
Rr397022	regulatory region 397022	1386 bp upstream
Rr558481	regulatory region 558481	1907 bp distal
Rr558482	regulatory region 558482	1636 bp distal
Rr558483	regulatory region 558483	1096 bp proximal
Rr558484	regulatory region 558484	1597 bp proximal
Ssb	small RNA binding exonuclease protection factor La	1643 bp upstream
Tssr18173	transcription start site region 18173	1601 bp upstream
Tssr18174	transcription start site region 18174	1609 bp upstream
Tssr18175	transcription start site region 18175	1662 bp upstream