rs29500878 SNP Detail

Summary

• ID
  rs29500878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57368611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTTTT AATACCGCAC
  R
  GGTTTAATCT AAGCAGGTGT TCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39572175	mCV23459307	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss145809639	ENSMUSSNP2592454	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29500878					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57368611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	1653 bp distal
Cpgi9391	CpG island 9391	788 bp distal
Cpgi9392	CpG island 9392	353 bp proximal
Crb3	crumbs family member 3	within coordinates
Rr405393	regulatory region 405393	1149 bp downstream
Rr529261	regulatory region 529261	1258 bp distal
Rr529262	regulatory region 529262	130 bp proximal
Rr529263	regulatory region 529263	699 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	1748 bp upstream
Tssr145365	transcription start site region 145365	854 bp downstream
Tssr145366	transcription start site region 145366	649 bp upstream
Tssr145367	transcription start site region 145367	706 bp upstream
Tssr145368	transcription start site region 145368	742 bp upstream
Tssr145369	transcription start site region 145369	875 bp upstream
Tssr145370	transcription start site region 145370	914 bp upstream
Tssr148875	transcription start site region 148875	1754 bp upstream
Tssr148876	transcription start site region 148876	378 bp downstream