rs29501221 SNP Detail

Summary

• ID
  rs29501221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23864990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTA CGAGATCTGA TTTAGGTGAA
  S
  AACGGTTGAG AGCACTCAGG AGTAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss39574049	mCV23796503	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss145329946	ENSMUSSNP5041353	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325326687	CHEV_17_23782983	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29501221					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23864990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	545 bp distal
Mmp25	matrix metallopeptidase 25	984 bp upstream
Rr339268	regulatory region 339268	389 bp distal
Tssr146620	transcription start site region 146620	1058 bp upstream
Tssr146621	transcription start site region 146621	1020 bp upstream
Tssr146622	transcription start site region 146622	979 bp upstream
Tssr146623	transcription start site region 146623	961 bp upstream
Tssr146624	transcription start site region 146624	943 bp upstream
Tssr146625	transcription start site region 146625	755 bp upstream
Tssr146626	transcription start site region 146626	707 bp upstream