rs29501222 SNP Detail

Summary

• ID
  rs29501222
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31275512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC TGGGGCATAT AAAGTTTGCG
  W
  GTCCAATGGG CCTCTCTTTC CAGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39574050	mCV24389010	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss145455207	ENSMUSSNP3505194	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29501222					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31275512 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	1156 bp upstream
Cpgi8940	CpG island 8940	727 bp proximal
Rr525355	regulatory region 525355	659 bp proximal
Rr525356	regulatory region 525356	1200 bp proximal
Rr525357	regulatory region 525357	1525 bp proximal
Rr525358	regulatory region 525358	1725 bp proximal
Tssr143637	transcription start site region 143637	1148 bp upstream
Tssr143638	transcription start site region 143638	1166 bp upstream
Tssr143639	transcription start site region 143639	1181 bp upstream
Tssr143640	transcription start site region 143640	1202 bp upstream
Tssr143641	transcription start site region 143641	1230 bp upstream