rs29502352 SNP Detail

Summary

• ID
  rs29502352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164791787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGGCGCC GGCGTTCAGG GAGATGCCCA TTTCGACGAC
  GACGAGTTGT GGTCGCTGGG CAAAGGCGTC GGTGAGATCC TGAGCCTTCC AGTATCCGCC
  Y
  CATCCCCACC CCTGTCCCAA CTCCCTTCTC TTACACTGGT GTGTGGCCAG ACGCCCTGAC
  TCTAGCCTCC TTTCTACAGT GATCCCCACT TACTATGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45319652	mCV23740771	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148233555	ENSMUSSNP54892	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29502352					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164791787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	918 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	1696 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	1669 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21690	transcription start site region 21690	1622 bp downstream
Tssr21691	transcription start site region 21691	1283 bp upstream
Tssr21692	transcription start site region 21692	1343 bp upstream