rs29502520 SNP Detail

Summary

• ID
  rs29502520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160206352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC TAAGCCCTGG GGGGAGGGAG
  Y
  TTGCAGTTAG CGCTCTTCTA GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45320460	mCV24753963	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss320593527	CHEV_2_160190168	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29502520					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160206352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12607	CpG island 12607	717 bp proximal
Gm57434	predicted gene, 57434	within coordinates
Mafb	MAF bZIP transcription factor B	within coordinates
Rr180	regulatory region 180	200 bp proximal
Rr55988	regulatory region 55988	within coordinates
Tssr730	transcription start site region 730	450 bp downstream
Tssr21381	transcription start site region 21381	28 bp upstream
Tssr21382	transcription start site region 21382	1347 bp upstream
Tssr21383	transcription start site region 21383	1798 bp upstream
Tssr21384	transcription start site region 21384	1822 bp upstream
Tssr27238	transcription start site region 27238	153 bp downstream
Tssr27239	transcription start site region 27239	301 bp downstream