rs29502860 SNP Detail

Summary

• ID
  rs29502860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129444069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT TTGGAGTCCA CACAACTGTA
  Y
  GCTGGGGCAA CCCCCTCTAG AATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45322223	mCV24477431	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss320505105	CHEV_2_129427885	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29502860					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129444069 () rs orientation: forward

Symbol	Name	Function Class
Rr564955	regulatory region 564955	574 bp distal
Rr564956	regulatory region 564956	1450 bp proximal
Rr564957	regulatory region 564957	1920 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20144	transcription start site region 20144	607 bp downstream
Tssr20145	transcription start site region 20145	52 bp upstream
Tssr20146	transcription start site region 20146	1581 bp upstream