rs29503003 SNP Detail

Summary

• ID
  rs29503003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31897344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA CCCACATGCC TATGCTGAAG
  Y
  CACCCACATC ACCGGGATTG GGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39572604	mCV24384287	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		T
ss60257446	NES15753521	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C		C	T	C	T		C	T	T	C		C
ss145462650	ENSMUSSNP6943520	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss325359839	CHEV_17_31815315	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29503003					SNP	T	T	C	C	T	C	C	C	C	T	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257446	NES15753521	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31897344 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	145 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	431 bp downstream
Tssr143681	transcription start site region 143681	554 bp upstream
Tssr143682	transcription start site region 143682	1199 bp upstream
Tssr143683	transcription start site region 143683	1269 bp upstream
Tssr147305	transcription start site region 147305	246 bp upstream
Tssr147306	transcription start site region 147306	204 bp upstream
Tssr147307	transcription start site region 147307	176 bp upstream
Tssr147308	transcription start site region 147308	128 bp downstream