rs29503127 SNP Detail

Summary

• ID
  rs29503127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26197198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA GACCCCAGCA TCTCCAGCAA
  Y
  GCTGGCAGTT GGCAAGTCCA CATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39575765	mCV23810068	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss325339346	CHEV_17_26115169	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29503127					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26197198 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329923	regulatory region 329923	798 bp distal
Rr329924	regulatory region 329924	403 bp proximal
Rr334464	regulatory region 334464	398 bp distal
Tssr146884	transcription start site region 146884	1663 bp downstream
Tssr146885	transcription start site region 146885	1712 bp downstream