rs29503408 SNP Detail

Summary

• ID
  rs29503408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74112732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC GTAACCCTCC TTTTGACTAG
  R
  ATCTCTTATC TCGTGAAGGG CTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39574665	mCV25305840	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss60279633	NES15784903	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G		G	G	G	A		G	G	G	G		G
ss145938503	ENSMUSSNP4307551	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss325449555	CHEV_17_74155077	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29503408					SNP	G	A	G	G	A	G	G	A	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279633	NES15784903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74112732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	234 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	886 bp distal
Rr530825	regulatory region 530825	1076 bp distal
Rr530826	regulatory region 530826	536 bp proximal
Rr530827	regulatory region 530827	1601 bp proximal
Tssr145810	transcription start site region 145810	898 bp downstream
Tssr145811	transcription start site region 145811	866 bp downstream
Tssr145812	transcription start site region 145812	836 bp downstream
Tssr145813	transcription start site region 145813	796 bp downstream
Tssr145814	transcription start site region 145814	781 bp downstream