rs29503501 SNP Detail

Summary

• ID
  rs29503501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52210002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GCCCAGCAAT AGATCACCAA
  Y
  ACTCGAGGAA CACAGTGGTA TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39575169	mCV25232022	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss145758520	ENSMUSSNP6556481	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss325417418	CHEV_17_52042299	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29503501					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52210002 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr370289	regulatory region 370289	1105 bp upstream
Rr405357	regulatory region 405357	821 bp upstream
Rr528759	regulatory region 528759	775 bp proximal
Rr528760	regulatory region 528760	1903 bp proximal
Tssr145177	transcription start site region 145177	1231 bp upstream
Tssr148690	transcription start site region 148690	946 bp downstream
Tssr148691	transcription start site region 148691	976 bp downstream