rs29503519 SNP Detail

Summary

• ID
  rs29503519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25404866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTTTT TTTTTTTTTT
  TTCTCTTCTG CTCTTCATTC CCACATGAGA ACTTAAAAAC TTGACAGAAG TGGTAGGGTA
  TGCTTGTCAT CTCAACACTT ATGAAACTGA GGCAGGAGGA TCCTAAGTTT GGGGTCTGCT
  TGGGCTACGT AGGGAGGGCC TGTCTCAAAC AAAACAAAAC ATCAATAATA TAGTGGGTTG
  K
  TTTTTTTTGT TTGTTTGTTT CTGTCTTTTT CACAGTGTTG TGATTGAACT CAGGAGTCTA
  TTGTGCTATC CTACCAATGA GGTCTGTTTC CAGCTCACAT AGAATTGCTT TTGCAAAAAA
  AAAAAAATGT TACATTTCAT GCAGTGGGTT CTCAGTGCTG CCAGGCTGAT AACTTATCTG
  AAGTGATGTG GGCATTTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39574368	mCV22798284	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss145380244	ENSMUSSNP4951345	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29503519					SNP	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25404866 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	1323 bp upstream
Cpgi8755	CpG island 8755	596 bp distal
Cpgi8756	CpG island 8756	1971 bp proximal
Rr370183	regulatory region 370183	1311 bp downstream
Rr523509	regulatory region 523509	833 bp distal
Tssr5037	transcription start site region 5037	1329 bp downstream
Tssr143142	transcription start site region 143142	1290 bp downstream
Tssr143143	transcription start site region 143143	1274 bp downstream
Tssr146818	transcription start site region 146818	1490 bp upstream
Tssr146819	transcription start site region 146819	1424 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	within coordinates