rs29504047 SNP Detail

Summary

• ID
  rs29504047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26198482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT TTCCAGGACA ATCTGGGGAT
  W
  TTACCAAGTC AAGGCCAGGG AGACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39573886	mCV23810092	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss145396015	ENSMUSSNP7120713	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss325339355	CHEV_17_26116453	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29504047					SNP	A	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26198482 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329924	regulatory region 329924	482 bp distal
Rr334464	regulatory region 334464	1682 bp distal
Tssr146884	transcription start site region 146884	379 bp downstream
Tssr146885	transcription start site region 146885	428 bp downstream