rs29504068 SNP Detail

Summary

• ID
  rs29504068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74409589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT CCCAGACCTT CTGAGCGAGA
  R
  AAGAGTGGGG AGGACAAAGG GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45319472	mCV25093520	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146763399	ENSMUSSNP1091698	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29504068					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74409589 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930445N08Rik	RIKEN cDNA 4930445N08 gene			within coordinates
Cpgi11782	CpG island 11782			within coordinates
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			1033 bp distal
Rr559318	regulatory region 559318			894 bp distal
Rr559319	regulatory region 559319			308 bp distal
Rr559320	regulatory region 559320			191 bp distal
Rr559321	regulatory region 559321			within coordinates
Tssr18388	transcription start site region 18388			197 bp downstream
Tssr24610	transcription start site region 24610			291 bp upstream
Tssr24611	transcription start site region 24611			162 bp downstream
Tssr24612	transcription start site region 24612			175 bp downstream
Tssr24613	transcription start site region 24613			216 bp downstream