rs29504404 SNP Detail

Summary

• ID
  rs29504404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152649412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGTGTGT GTATGTGTGC
  AAGCGCGCGC GCACACACAC ACAAATCAGG TCCTAAAGAA ACCCAGGACA AGGCTCACTT
  AGGCCCTGAG GCTCCTTCCA GCACTTCTTA CCCTGTCCCC CACCCTAAAC CTCTCCAGCC
  TTCTCTTCAC ATCTCTTCCC CTAGCTTCTC ATTCCATTTA TAACCATGCC ATTTTGGCCA
  Y
  GTGCTCTATT GATCTTTGGC TTTTGGCTCT TTTTCCCTTC TTTTTTCTTC TTCTTGCTTC
  CATGCCCCTC TCATTGTCCA GTTTAGTCTG AAATCTTCCA GATGCCATAC TCCCCCTCAT
  ACATCTGTAT GTATGTGTGT GCAGAATGGA ATTTTATTCA GTCATAAAAA AAACTGAAAT
  TATGAGCTTT GCAAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45320270	mCV27575678	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147974797	ENSMUSSNP3446478	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29504404					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152649412 () rs orientation: forward

Symbol	Name	Function Class
A630035D09Rik	RIKEN cDNA A630035D09 gene	48 bp downstream
Bcl2l1	BCL2-like 1	within coordinates
Rr374093	regulatory region 374093	1421 bp upstream
Rr567477	regulatory region 567477	865 bp distal
Rr567478	regulatory region 567478	605 bp proximal
Tssr26861	transcription start site region 26861	1392 bp upstream