rs29504554 SNP Detail

Summary

• ID
  rs29504554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24714819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGCAAGCA GAGGTCCTAA AATTCAATTC CCAACAACCA
  CATGAAGGCT CACAACTATG TGTACAGCTA CAGTGTACTC ACATACATAA AATAACTAAA
  Y
  AAATCTTTTA AAAATAGATA CTTAACATAG TAAAACGGCT ATTTCCAGCA TGTGCATGCA
  CGTCCCCTCA TCAGTTCCCT TCTTGATCTC TTCTGAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45819238	mCV22685926	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss148095140	ENSMUSSNP928387	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29504554					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24714819 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	1210 bp distal
Rr608341	regulatory region 608341	923 bp proximal
Rr608342	regulatory region 608342	996 bp proximal
Rr608343	regulatory region 608343	1176 bp proximal