rs29505534 SNP Detail

Summary

• ID
  rs29505534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123130047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT CTGGACTAGG AGCAAACAAA
  Y
  TTATGTTGTT ATTCTAGCTC TTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45820618	mCV24884188	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss51195100	NES13813335	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	T		T	T	T	C		C	T	C
ss149192262	ENSMUSSNP1507209	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321670147	CHEV_5_123441993	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29505534					SNP	C	C	C	T	C	T	T	T	T	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195100	NES13813335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123130047 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	509 bp downstream
Rr620036	regulatory region 620036	1168 bp distal
Rr620037	regulatory region 620037	63 bp distal
Tssr48738	transcription start site region 48738	1215 bp downstream
Tssr48739	transcription start site region 48739	1204 bp downstream
Tssr48740	transcription start site region 48740	1159 bp downstream
Tssr48741	transcription start site region 48741	1120 bp downstream
Tssr53175	transcription start site region 53175	1694 bp upstream
Tssr53176	transcription start site region 53176	1577 bp upstream
Tssr53177	transcription start site region 53177	1521 bp upstream
Tssr53178	transcription start site region 53178	1489 bp upstream
Tssr53179	transcription start site region 53179	1455 bp upstream
Tssr53180	transcription start site region 53180	1411 bp upstream