rs29506052 SNP Detail

Summary

• ID
  rs29506052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCTACACGGA GAAACCCTGT CTCAAAAACA AAAACAAAAC AAAAACTAAG AAAAAACCCT
  TCTAGACCAA TCCTAGCACA CAGGGGGCAG ACAGGTGGAT CTCTATGAGT TCCAGGCCAA
  CCAAAGCTAC ACGGTCTCAA AATAAAACAC CAAGTGGTCG GGTAGTACCG ATTTGGTTCC
  TCTGCTTCTA GAGTTTCCTG ATTAATTATC TGCGTTGAGA AACCACGAAG CCTCTGGGAT
  AGAGGAAGAA GAGGTAAGCA GACAGGAAAA CGCCAAGCCA GCAGTAACAC AACTTTCATA
  Y
  GATCCAATTC TAGGAAAAGA ACAGTGGCTT TCTACAAACT CCACTGATTC ACAACAGTGG
  ACATGTCTTT TAAAAAGGTC TCACATTGCA TGGGACTTAT CTGCAATGAA AGGTATTGAG
  GTTTGTGGGT TCATTTCTTT CAGTACTGGG GACAAGACTT AACTAGGAAT GCCAGAGCTA
  AGTCCTCACC CTCTTCCCCC TTTGAAATAT AAGGGAACAC CTGCAGGGCC AACTGTCACC
  AATATCTAGG GCTTAATATT CCTCAAGATC TGAATGGCCT TTCTCATTAA AACAAGATAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45822094	mCV22340592	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148191021	ENSMUSSNP6640189	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29506052					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204555 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1429 bp upstream
Cpgi15696	CpG island 15696	524 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	935 bp distal
Rr125009	regulatory region 125009	45 bp proximal
Rr399020	regulatory region 399020	1243 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1416 bp upstream
Tssr45659	transcription start site region 45659	1818 bp upstream
Tssr50520	transcription start site region 50520	647 bp downstream
Tssr50521	transcription start site region 50521	668 bp downstream
Tssr50522	transcription start site region 50522	787 bp downstream
Tssr50523	transcription start site region 50523	803 bp downstream
Tssr50524	transcription start site region 50524	1025 bp downstream