rs29506160 SNP Detail

Summary

• ID
  rs29506160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:145916976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAATAACC AGTAACAGAT ACAGAATAAA TGAGCCCTGA
  TTACAATTGG GAATGTTTCT TTGACTCTTT TAGGTATTGA TTTGAGCTGG AATTACAAGA
  K
  TAAAGAGGAA GATGAAATAA GAAACAGAGA TTTTATTATT AAAGTATAAA AAGGATGTTA
  CATTTGCTGG AGCAGAACTC CTGAAATGTA GGATCAAAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45819661	mCV23513676	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss144640540	ENSMUSSNP189836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29506160					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145916976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyp3a25	cytochrome P450, family 3, subfamily a, polypeptide 25			Intron
				Noncoding-Transcript-Variant
Tssr49764	transcription start site region 49764			788 bp upstream
Tssr54456	transcription start site region 54456			211 bp downstream
Tssr54457	transcription start site region 54457			1062 bp downstream
Tssr54458	transcription start site region 54458			1089 bp downstream
Tssr54459	transcription start site region 54459			1134 bp downstream
Tssr54460	transcription start site region 54460			1155 bp downstream
Tssr54461	transcription start site region 54461			1290 bp downstream