rs29506327 SNP Detail

Summary

• ID
  rs29506327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11988742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTAGGG CAAGGCCAGC CACCCAGCAG AACGGCCTCC
  TCTCTCTTTA GCTTACTTTG TTCATTGCTT AAAAGCATTT TTTAAAAGGA AAAGTGTATA
  Y
  GGACATTTAT CAAGTAATTT GATATTTTTG AATCTTCCTT ACTACATTAC TGCCTAGTCA
  CGTGGTAAAG AGCCTACAGT GAAAACTATC TAAATGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39574008	mCV22930128	ABI	CRAMUS_MOUSE	f	SNP		C	C			T
ss48347116	NES12242186	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		C	C		C	T	C		T
ss145165341	ENSMUSSNP3855000	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325300452	CHEV_17_11962721	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29506327					SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48347116	NES12242186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11988742 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334164	regulatory region 334164	542 bp distal
Rr343776	regulatory region 343776	within coordinates