rs29507409 SNP Detail

Summary

• ID
  rs29507409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACCTAGCAT TGCAGAAGGT AGGGTGGATT CTTGCTCCGC TCGGGGTGGA GTCTAATAGG
  GAAGGGCGGG ACCACTTCGT GCTACTGCTG GTCTATCAGG GGAGCTCAAA AGTCTCATGG
  GTGGGCCCGC TGTGAAGCGG GAGGGGCTTT GACGCGCGCC CCGCCTCCCA GTGGTGCGTC
  TTTTGCGGTG CAGGAAAGCT ACTAAGTACG CGCGTGCGCA TAGCGCGCGT GGGTCCTAAA
  GTGGTGTTTC GTGGGTTATC TTTGCAAATG GGCTCCGCGG CCTAGCGCCC TGGTGGCCTA
  R
  AAACGAAGCC TGCAAGGAAG GGGTTCTCCG CCGAGGTGAG GGCAGTGACG AAGGCAGCCG
  GCGGTGGGGT GGGGGAGGCG CGTCTTCTTG GGGCCAGGAG CAGACAAAGC CCCTTTGTCT
  CACCACGCAG CCGGACCGGG CTGGTTGGAG CCGCTTGGAA ACCTGGCACT GTCAGGACCC
  GGGAGACTCG GGGAACCCTC CGGTGTGCGG TGACCAGGGC CCACATTCTG CTCTCGTCTC
  CGCAGCGCCT CGGTCCTGAA GCATGGCAGC CATCCCTTCC AGCGGCTCGC TCGTGGCTAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45323360	mCV22913087	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29507409					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829212 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	within coordinates
Gm75115	predicted gene, 75115	within coordinates
Gm75119	predicted gene, 75119	1715 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	73 bp distal
Rr572940	regulatory region 572940	122 bp distal
Rr572941	regulatory region 572941	within coordinates
Rr572942	regulatory region 572942	284 bp proximal
Rr572943	regulatory region 572943	1225 bp proximal
Rr572944	regulatory region 572944	1726 bp proximal
Tssr22287	transcription start site region 22287	72 bp downstream
Tssr22288	transcription start site region 22288	within coordinates
Tssr22289	transcription start site region 22289	90 bp upstream
Tssr22290	transcription start site region 22290	178 bp upstream
Tssr22291	transcription start site region 22291	217 bp upstream
Tssr22292	transcription start site region 22292	360 bp upstream
Tssr22293	transcription start site region 22293	458 bp upstream