rs29508065 SNP Detail

Summary

• ID
  rs29508065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112418937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA GGCACTATTG ACTCGTTTAT
  Y
  TGTAGTTAGC ATTGACTGAC GTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45820079	mCV24791760	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29508065					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112418937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	1538 bp distal
Cpgi16257	CpG island 16257	114 bp proximal
Crybb1	crystallin, beta B1	1486 bp downstream
Gm46941	predicted gene, 46941	within coordinates
Rr399259	regulatory region 399259	1894 bp upstream
Rr617313	regulatory region 617313	within coordinates
Rr617314	regulatory region 617314	318 bp proximal
Rr617315	regulatory region 617315	1760 bp proximal
Tssr47980	transcription start site region 47980	1753 bp downstream
Tssr47981	transcription start site region 47981	1607 bp downstream
Tssr47982	transcription start site region 47982	1589 bp downstream
Tssr47983	transcription start site region 47983	1575 bp downstream
Tssr47984	transcription start site region 47984	1565 bp downstream
Tssr47985	transcription start site region 47985	1526 bp downstream
Tssr52561	transcription start site region 52561	1554 bp upstream
Tssr52562	transcription start site region 52562	1520 bp upstream