rs29508954 SNP Detail

Summary

• ID
  rs29508954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT AGCCAGTACA GTTACGTATT
  Y
  CATACCCTCA CATAGAATAA ATGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45821428	mCV22817579	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss51715850	NES14748589	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T		C	T	C	C		C
ss148353173	ENSMUSSNP4701745	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321527214	CHEV_5_46059011	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29508954					SNP	C	C	T	T	T	C	T	C	C	T	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715850	NES14748589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825114 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	930 bp downstream
Cpgi15841	CpG island 15841	1473 bp proximal
Rr367838	regulatory region 367838	1810 bp upstream
Rr611093	regulatory region 611093	574 bp proximal
Rr611094	regulatory region 611094	718 bp proximal
Rr611095	regulatory region 611095	1123 bp proximal
Rr611096	regulatory region 611096	1657 bp proximal
Rr611097	regulatory region 611097	1898 bp proximal