rs29509058 SNP Detail

Summary

• ID
  rs29509058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:103469693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTTAT GGTCCTGTCT
  GATCAAGATG ATTTCTCCCA CAAGAGATGT CCAAAGCAAA CAATCTTAAA GACTTGGAGA
  ATCTTCCTTT CCTGTCTTCC AAAGTAAGAG GGGAAAGGGG CGGAGGGGGG CGGGGGTGAG
  AAGAAAACCA GAGATAGCAA CCTAGTGGAT TACAAAACTC GGTGTGTCAG GAAGAGACCG
  R
  TAATTTTTGG ATGCACAGCC TTCGAAGAAA TGAGGCTAGA CAAAGTCCTC TGAACAAGAC
  ACATCCTATC CAGATTGGTG ACAGCGCTCC TCTGGACACT GAGTCCAAAT AGGAGCCGGC
  GCGATAGGCT TAGCATGGGG AATCTTCCTC TTCCCCAGGA TGAAAGGTGA AGCGACCACC
  AAAACCACCC ACGGGCGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39076244	mCV25108935	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss145124107	ENSMUSSNP2166324	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29509058					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103469693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6053	CpG island 6053	103 bp proximal
Gm61190	predicted gene, 61190	1598 bp downstream
Gm61201	predicted gene, 61201	115 bp downstream
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Rr485329	regulatory region 485329	796 bp proximal
Rr485330	regulatory region 485330	997 bp proximal
Tssr120897	transcription start site region 120897	635 bp downstream
Tssr120898	transcription start site region 120898	596 bp downstream
Tssr120899	transcription start site region 120899	577 bp downstream
Tssr123874	transcription start site region 123874	1244 bp downstream