rs29509163 SNP Detail

Summary

• ID
  rs29509163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCTGCG ACAGGAAGAA
  CAATTGGACC CTAGCCTAGG TGAGTTAGAT CCCGTGTGGC AGGCAGTTCA CATAAGAATG
  GCTCCCATAG GTTCATAGGT TTGAATGCTT AATCACCAAA GAGTGGAACT ATTTAAAAGG
  ATTAAGAGGT ATAGCCCAAG CCAGGCCCAG TGCCTCTCCC TTCCTGCGGC CTGGGAATCC
  R
  GATGTAGAAC TTTCAGCTGC TTCTCCAGCA CCACGTCTGC CTGCATGCCA CGTGCTTTCT
  AGTCATGGTG ACAATGGACT TGAACCTCTC AGACTATAAG CAAGCCCCAG TTAAACGCGT
  TCCTTTTAAA GAGTTGCTAT GGTCATGGTG TCTCTTCACA GCAGGAGAAT AGAGACTAAG
  GCATCCTGTC TCAAGATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39079629	mCV22708353	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148681907	ENSMUSSNP531639	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29509163					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	996 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	620 bp upstream
Rr369647	regulatory region 369647	1186 bp upstream
Tssr118345	transcription start site region 118345	707 bp upstream
Tssr121451	transcription start site region 121451	837 bp upstream
Tssr121452	transcription start site region 121452	681 bp upstream
Tssr121453	transcription start site region 121453	1136 bp downstream
Tssr121454	transcription start site region 121454	1447 bp downstream
Tssr121455	transcription start site region 121455	1469 bp downstream
Tssr121456	transcription start site region 121456	1575 bp downstream
Tssr121457	transcription start site region 121457	1599 bp downstream