rs29509370 SNP Detail

Summary

• ID
  rs29509370
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165585592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGTATC CATACATCAG
  CATAATTGGT ACCTACATAC CACAAAAAGT AGTGTCCCTT AGAGAGAGAA AACTCCCAAC
  ACCTTAGTTA CCATGCAAAG CGAAAGCTCC TTAAACATGC AGGGTTTCTC CAGCTCCCCA
  CAGCTCCCAG CCCAGTCCTA GGGCAGCAGG CTCTTGTGCT CTGTGTACCT AATACAGCCC
  W
  CTAACCCCCT GTAAATTAAG TTCTACTGAC ACACAGCTAT TCCCATGCAC TTGCGTGCTG
  TCTGAAGTTG CTTTTGTGTT GCCCAAGAAG GGCTGAGGGG TTTAGTATGG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TATTTATGTA TAGGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTTGCATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45323750	mCV22645827	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29509370					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165585592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			1106 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569990	regulatory region 569990			1438 bp distal
Rr569991	regulatory region 569991			1939 bp distal
Rr569992	regulatory region 569992			977 bp distal
Rr569993	regulatory region 569993			1175 bp proximal