rs29509496 SNP Detail

Summary

• ID
  rs29509496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23621360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG GCACTGGGAA TGAATGCACA
  M
  AGTTTCAGCT CACACCTCGG TCTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45823497	mCV23735857	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss148057241	ENSMUSSNP6737181	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321488918	CHEV_5_22922180	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29509496					SNP	A	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23621360 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1888 bp proximal
Gm57286	predicted gene, 57286	167 bp downstream
Gm72704	predicted gene, 72704	1937 bp upstream
Rr377698	regulatory region 377698	1136 bp downstream
Rr608093	regulatory region 608093	960 bp distal
Rr608094	regulatory region 608094	within coordinates
Rr608095	regulatory region 608095	395 bp distal
Rr608096	regulatory region 608096	1447 bp proximal
Rr608097	regulatory region 608097	1940 bp proximal
Rr608098	regulatory region 608098	1948 bp proximal