rs29509578 SNP Detail

Summary

• ID
  rs29509578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:103469614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCCAGC AGAGACCGGG
  GAAATACCAG TCTGGCACGG CGGAATTAAT TTCACACGGA AGACTACGCT AGGGTCATGT
  TTTATTTATG GTCCTGTCTG ATCAAGATGA TTTCTCCCAC AAGAGATGTC CAAAGCAAAC
  AATCTTAAAG ACTTGGAGAA TCTTCCTTTC CTGTCTTCCA AAGTAAGAGG GGAAAGGGGC
  R
  GAGGGGGGCG GGGGTGAGAA GAAAACCAGA GATAGCAACC TAGTGGATTA CAAAACTCGG
  TGTGTCAGGA AGAGACCGAT AATTTTTGGA TGCACAGCCT TCGAAGAAAT GAGGCTAGAC
  AAAGTCCTCT GAACAAGACA CATCCTATCC AGATTGGTGA CAGCGCTCCT CTGGACACTG
  AGTCCAAATA GGAGCCGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39076435	mCV25108924	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss145124102	ENSMUSSNP7208017	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29509578					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103469614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6053	CpG island 6053	182 bp proximal
Gm61190	predicted gene, 61190	1677 bp downstream
Gm61201	predicted gene, 61201	36 bp downstream
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Rr485329	regulatory region 485329	875 bp proximal
Rr485330	regulatory region 485330	1076 bp proximal
Tssr120897	transcription start site region 120897	556 bp downstream
Tssr120898	transcription start site region 120898	517 bp downstream
Tssr120899	transcription start site region 120899	498 bp downstream
Tssr123874	transcription start site region 123874	1323 bp downstream