rs29509611 SNP Detail

Summary

• ID
  rs29509611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122836409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC CCACATTCAA ACAACCGAAA
  Y
  CCCAAAATAA AATGTGGTAA ACATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45821137	mCV22632330	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss149189842	ENSMUSSNP4541886	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C		C
ss321669493	CHEV_5_123148355	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29509611					SNP	T	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122836409 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	746 bp upstream
Gm71244	predicted gene, 71244	within coordinates
Rr378567	regulatory region 378567	within coordinates
Rr619948	regulatory region 619948	within coordinates
Rr619949	regulatory region 619949	1869 bp proximal