rs29509661 SNP Detail

Summary

• ID
  rs29509661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTGAAC TCAGAAATTT
  GCCTGCCTCT GCATTCCAAG CGCTGGGATT AAAGGCATGT GCCACCATGC CTGGCCTTAA
  ATGAAATAAT TTTAAGTGAT CAGTGCAGGA ATTATTTAAA AAATATGTAA GGAGGAAATT
  ACATGAAGTT TCCTGTTAAA AATACTAAAA CTGTAAGTGT GGTGGCACAA TACCTGTGAT
  Y
  GAAGCCACTT GTGAGCAAGC CTGCGACAGG AAGAACAATT GGACCCTAGC CTAGGTGAGT
  TAGATCCCGT GTGGCAGGCA GTTCACATAA GAATGGCTCC CATAGGTTCA TAGGTTTGAA
  TGCTTAATCA CCAAAGAGTG GAACTATTTA AAAGGATTAA GAGGTATAGC CCAAGCCAGG
  CCCAGTGCCT CTCCCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39078038	mCV22708366	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148681892	ENSMUSSNP6789901	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29509661					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	1212 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	172 bp proximal
Rr369646	regulatory region 369646	836 bp upstream
Rr369647	regulatory region 369647	1402 bp upstream
Tssr118345	transcription start site region 118345	923 bp upstream
Tssr121451	transcription start site region 121451	621 bp upstream
Tssr121452	transcription start site region 121452	465 bp upstream
Tssr121453	transcription start site region 121453	1352 bp downstream
Tssr121454	transcription start site region 121454	1663 bp downstream
Tssr121455	transcription start site region 121455	1685 bp downstream
Tssr121456	transcription start site region 121456	1791 bp downstream
Tssr121457	transcription start site region 121457	1815 bp downstream