rs29509678 SNP Detail

Summary

• ID
  rs29509678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124045670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TCCCCAGGCT GTGGCATTGC
  Y
  GTCCTTGTCC CTGGCTTGGT CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45822540	mCV24597058	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss149200133	ENSMUSSNP5754757	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321672045	CHEV_5_124357616	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29509678					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124045670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	within coordinates
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	within coordinates
Rr399353	regulatory region 399353	274 bp downstream
Tssr48807	transcription start site region 48807	410 bp downstream
Tssr48808	transcription start site region 48808	397 bp downstream
Tssr48809	transcription start site region 48809	315 bp downstream
Tssr48810	transcription start site region 48810	292 bp downstream
Tssr48811	transcription start site region 48811	220 bp downstream
Tssr48812	transcription start site region 48812	47 bp downstream
Tssr48813	transcription start site region 48813	36 bp downstream
Tssr48814	transcription start site region 48814	20 bp downstream
Tssr48815	transcription start site region 48815	within coordinates
Tssr48816	transcription start site region 48816	15 bp upstream
Tssr48817	transcription start site region 48817	475 bp upstream
Tssr48818	transcription start site region 48818	571 bp upstream
Tssr48819	transcription start site region 48819	1483 bp upstream
Tssr48820	transcription start site region 48820	1517 bp upstream