rs29509983 SNP Detail

Summary

• ID
  rs29509983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144035548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAGACC TGCTTTGTGA
  TCGCAGAATG CCTCGTTGTT GGGGTGCATC TTAATTATGA TTAATTACCA GGAGGATTAT
  GAGGAAGGGC TTTCACTGAG CCAGCTCTGC TCCTCACAGA GCCTCTTGTC AGGTTGGAGC
  ATGAATTCCC GGCTTCCTTG GATGCAGTGG GTAGAGCTTC CGGATGGAAG TCAACGCACA
  R
  CGGGGCAATT GTACCTCCTC TCTAGACCTT TGCCTTCCTT CCCCTCTGCC CAGAAAGATC
  AGCAGGAAGA GGCCGAGTTG AGCTCAAGTG TCACAGGCCG GCTACTGCTT TCCTCAGGTT
  TTTAGTGTGG CTTGCCTCGA TCAACACCAG ACATATTCCC TAGACATCCT GTGCCCCGGG
  CTGAGTCAGT TAGCACCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45821847	mCV23378240	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss144607468	ENSMUSSNP4301359	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321709181	CHEV_5_144859599	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29509983					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144035548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	1446 bp proximal
Gm71407	predicted gene, 71407	525 bp downstream
Gm71412	predicted gene, 71412	within coordinates
Lmtk2	lemur tyrosine kinase 2	1706 bp upstream
Rr111125	regulatory region 111125	1053 bp proximal
Rr124743	regulatory region 124743	1052 bp proximal
Rr399492	regulatory region 399492	1274 bp upstream
Tssr49686	transcription start site region 49686	1623 bp upstream
Tssr49687	transcription start site region 49687	1657 bp upstream