rs29509984 SNP Detail

Summary

• ID
  rs29509984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCAGAA AGAAATTACC
  TCAGCACTGT ATCTGTACAG ACTGCATAAC TTTTAAACTC CCGGGGCTGA AATAATAATA
  TGGAGACACA CGCACAGGTA CAGGAAATAC AGCCAGTCCA CAGCCTTTTC AGACTGCAGC
  TGACCGGAAG AAAGCCTTTG GTTCATTCAT TCGGATAGCC TCGGTAGTAC AGCCCTGAAA
  Y
  AGAAGTTGGG CTTTTAAAGA GAAAGGAAAA AAAGTCTCTA CACTCGCTGA GAAGAGATAA
  ATCGATACAC AGGAGGGAAT AGAGAATCGG ATTCAGCGTC TCTAATGCAG GCAGGCAAAA
  GGTAAGCCTC TCTCGTGTGG CAGTTTAAGA GAAAAGTGGT GGTTGTTTGT GGCTTTCTGG
  GGTACAGCAA CCTTGATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45821336	mCV24884201	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss51195113	NES13813430	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	T		T	T	T	T		T	T	C	T		C
ss149192202	ENSMUSSNP4315653	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss321670134	CHEV_5_123439979	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29509984					SNP	C	C	C	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195113	NES13813430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128033 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1241 bp distal
Cpgi16566	CpG island 16566	437 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	836 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	700 bp upstream
Rr620030	regulatory region 620030	1448 bp distal
Rr620031	regulatory region 620031	947 bp distal
Rr620032	regulatory region 620032	822 bp distal
Rr620033	regulatory region 620033	675 bp distal
Rr620034	regulatory region 620034	174 bp distal
Rr620035	regulatory region 620035	29 bp distal
Rr620036	regulatory region 620036	346 bp proximal
Rr620037	regulatory region 620037	847 bp proximal
Tssr48730	transcription start site region 48730	718 bp downstream
Tssr48731	transcription start site region 48731	689 bp downstream
Tssr48732	transcription start site region 48732	655 bp downstream
Tssr48733	transcription start site region 48733	604 bp downstream
Tssr48734	transcription start site region 48734	358 bp downstream
Tssr48735	transcription start site region 48735	231 bp downstream
Tssr48736	transcription start site region 48736	208 bp downstream
Tssr48737	transcription start site region 48737	27 bp downstream
Tssr48738	transcription start site region 48738	788 bp upstream
Tssr48739	transcription start site region 48739	805 bp upstream
Tssr48740	transcription start site region 48740	820 bp upstream
Tssr48741	transcription start site region 48741	885 bp upstream
Tssr53169	transcription start site region 53169	1444 bp upstream
Tssr53170	transcription start site region 53170	1265 bp upstream
Tssr53171	transcription start site region 53171	890 bp upstream
Tssr53172	transcription start site region 53172	859 bp upstream
Tssr53173	transcription start site region 53173	690 bp upstream
Tssr53174	transcription start site region 53174	632 bp upstream
Tssr53175	transcription start site region 53175	315 bp downstream
Tssr53176	transcription start site region 53176	434 bp downstream
Tssr53177	transcription start site region 53177	490 bp downstream
Tssr53178	transcription start site region 53178	507 bp downstream
Tssr53179	transcription start site region 53179	548 bp downstream
Tssr53180	transcription start site region 53180	563 bp downstream