rs29511377 SNP Detail

Summary

• ID
  rs29511377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166554201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAACTTTT CCCCCCCTGG TTTCTTTAAT TCTAAGAATG
  TGGACTCTAA TCAATTTCCA TTATCCTAGC GGCCCCGTCT CCGTAGGGAC GATTTAAAAC
  M
  GCAGTCAACC TAGCACAACA GCCAGGGGCA CACATGGGGG AGTGGGTTTT GTTTTTTTTC
  CCCCATTAAT ATAAAAACTA GTTTAGATTT CCTGTTTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45323964	mCV23102404	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss148258360	ENSMUSSNP91031	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29511377					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166554201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	520 bp proximal
Gm57440	predicted gene, 57440	1486 bp upstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	within coordinates
Rr397493	regulatory region 397493	1491 bp upstream
Rr570354	regulatory region 570354	5 bp distal
Rr570355	regulatory region 570355	633 bp proximal
Rr570356	regulatory region 570356	996 bp proximal
Rr570357	regulatory region 570357	1541 bp proximal
Tssr21773	transcription start site region 21773	1820 bp upstream
Tssr27709	transcription start site region 27709	1451 bp downstream
Tssr27710	transcription start site region 27710	1477 bp downstream