rs29511643 SNP Detail

Summary

• ID
  rs29511643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24849824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATCTGACT CCCTCTTCTG GAGTGTCTGA AGACAGCTAC
  AGTGTACTTA CATATAATGA ATAAATAAAT CTTAAAAAAA AAAAAAAGAG TTGTCTTGGT
  Y
  ATGATGTCTG TTCACAGCAG TAAAACCCTT ACTAACACAG TAATCTAGGT GGAGACTGCA
  TCCAATCAAG ATGGAGACTG TATCCATTAT GCCCTGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45823526	mCV23207950	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29511643					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24849824 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	621 bp upstream
Tssr45439	transcription start site region 45439	639 bp upstream
Tssr45440	transcription start site region 45440	656 bp upstream
Tssr45441	transcription start site region 45441	668 bp upstream
Tssr45442	transcription start site region 45442	675 bp upstream