rs29512109 SNP Detail

Summary

• ID
  rs29512109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105280672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGACAGA ACAACAATTG
  GTACAAACAC TCTGGGGTCC GTTTGAACAA TTCCTAAAAC AATAAAAGTA AAAATCTGTA
  TGATCCAGAG ATCCCATTTC TATGCATAAC TAATTGTTAA TCTTCATTGT TGACTTGATG
  GAATTTTAAT TCAAATTTCT GGTCATTTCT ATGAGGGGTT GTCTAGATGA CATAGCATGG
  R
  GAGACCCATC CTAAAGAAGA GTGGTCCTAT TTCATTGGCT GGGTCTCAAC CTGAAGGAAA
  AGGAGGAAGA GAACAGAACA CAGCTTTTGT TCCTCGGCTT CACAGTAGTA GAGGAGATGT
  GACCAACTGC CTCATGTTCC TGATGACTGA CTTGATGGGC TCTTGTAGAA TCTCTTAGTA
  AGCATCACCC GTCAATAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45820273	mCV23375047	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148988993	ENSMUSSNP917827	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29512109					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105280672 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1020 bp upstream
Tssr52267	transcription start site region 52267	1474 bp upstream
Tssr52268	transcription start site region 52268	1420 bp upstream
Tssr52269	transcription start site region 52269	1345 bp upstream
Tssr52270	transcription start site region 52270	1183 bp upstream
Tssr52271	transcription start site region 52271	1065 bp upstream
Tssr52272	transcription start site region 52272	1002 bp upstream
Tssr52273	transcription start site region 52273	924 bp upstream
Tssr52274	transcription start site region 52274	893 bp upstream
Tssr52275	transcription start site region 52275	868 bp upstream
Tssr52276	transcription start site region 52276	834 bp upstream
Tssr52277	transcription start site region 52277	818 bp upstream
Tssr52278	transcription start site region 52278	791 bp upstream
Tssr52279	transcription start site region 52279	729 bp upstream
Tssr52280	transcription start site region 52280	678 bp upstream
Tssr52281	transcription start site region 52281	647 bp upstream
Tssr52282	transcription start site region 52282	630 bp upstream
Tssr52283	transcription start site region 52283	544 bp upstream
Tssr52284	transcription start site region 52284	487 bp upstream
Tssr52285	transcription start site region 52285	455 bp upstream
Tssr52286	transcription start site region 52286	425 bp upstream
Tssr52287	transcription start site region 52287	410 bp upstream
Tssr52288	transcription start site region 52288	396 bp upstream
Tssr52289	transcription start site region 52289	316 bp upstream
Tssr52290	transcription start site region 52290	209 bp upstream
Tssr52291	transcription start site region 52291	122 bp downstream
Tssr52292	transcription start site region 52292	601 bp downstream
Tssr52293	transcription start site region 52293	771 bp downstream
Tssr52294	transcription start site region 52294	868 bp downstream
Tssr52295	transcription start site region 52295	1186 bp downstream
Tssr52296	transcription start site region 52296	1808 bp downstream
Tssr52297	transcription start site region 52297	1886 bp downstream
Tssr52298	transcription start site region 52298	1979 bp downstream