rs29512369 SNP Detail

Summary

• ID
  rs29512369
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64303482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC CAGCAGGTGT CAAAGGCAGG
  S
  GGACCTCAGA GTTTGAGGCC ACCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39076866	mCV23508584	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss149161900	ENSMUSSNP3263014	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	C
ss324379433	CHEV_13_64256976	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29512369					SNP	G	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64303482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5774	CpG island 5774	1430 bp distal
Gm47513	predicted gene, 47513	1072 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	327 bp downstream
Rr273318	regulatory region 273318	within coordinates
Rr281559	regulatory region 281559	1081 bp distal
Tssr120196	transcription start site region 120196	1948 bp downstream