rs29512564 SNP Detail

Summary

• ID
  rs29512564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89586093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAATCATAC AAAGAAATTT GGAAAGAGAG ACAGCTTACT
  TTTCCCCATT CTGGGAAAGT AGAGACCTGC ATTCTGGGGT AACAGAAACA AACCACACAC
  Y
  ACTCTACTTA CTGGTCCATG GCTTGTGTGG TACTCTGACC ACAGAGGTCT TTGCCAGTTG
  GCAACTTGAT AGCTGGCAAT TGAAGTGGTT CAGCAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45822170	mCV22861606	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148801887	ENSMUSSNP776635	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321604691	CHEV_5_89867259	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29512564					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89586093 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr51708	transcription start site region 51708	31 bp downstream
Tssr51709	transcription start site region 51709	208 bp downstream
Tssr51710	transcription start site region 51710	1374 bp downstream