rs29513345 SNP Detail

Summary

• ID
  rs29513345
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115077874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAGCAAGCA CATCAAACAA TTAAAGGAAA GAAATCATAA AGAAATAACT TTAAAACAAG
  TATTTAAAGC AAGCAAGATG GCTCAAGAGG TGAAAATATT TGCTACCAAG CCTGGCAAAC
  TGAGTTTGAT CCCCAAACGT GCAGATCTGG GGCTGGAGAG TTGGCTCAGC GGTTAAGAGC
  ACTGTCTGTG CTTCCAGAGG TCCTGAGTTC AATTCCCAGT AACCACATGG TGGCTCACAA
  CCATCTGTAA TGGGATCTGA TGTCCTCTTC TGAATAAATA AATAAATCTT TAAAAAAAAA
  W
  ATATATATAT ATATATATTA GCCAGGCAGT GGTGGTGAAC ACTTTAATCC CAGCACTTGA
  GAGGCAGAGG CAGGCAGATT TCTGAGTTCA AGGACAGCCT GGTCTACAGA GTGAGTTCCA
  GGACAACCAG GTCTACACAG AGAAACCCTG TCTCAAAACA AACAAACAAA AAAGATGTGC
  AGGCTGGGCG TGGTGGCACA CACCTTTAAT CCCAGCACTC GGGAGGCAGA GGCAGGCGGA
  TTTCTGAGTT CGAGGCCAGC CTGATCTACA AAGTGAGTTC CAGGACAGCC AGAGCTATAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45823639	mCV25153137	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
ss149119386	ENSMUSSNP5547464	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29513345					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115077874 () rs orientation: forward

Symbol	Name	Function Class
Oasl1	2'-5' oligoadenylate synthetase-like 1	1900 bp downstream
Rr618069	regulatory region 618069	1526 bp proximal
Rr618070	regulatory region 618070	1890 bp proximal
Tssr48190	transcription start site region 48190	1936 bp downstream
Tssr48191	transcription start site region 48191	1889 bp downstream