rs29514594 SNP Detail

Summary

• ID
  rs29514594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAAAAA AAAAAAAAGA
  AAGAAAGAAA GAAAAGAAAA GGAGAAAAAA GATGCAGGAA GCCGAACTCC CAGGGCAGAG
  TCTGCTGGAG GCTTTGCCTC CAGTGCTTAA GTGTAGCCTC CATCTTTCTT TGGGGACCCA
  GGGCGCGGTT GGCTGTGCCG CTGTGGCTTC ATTCTCTGGG GCGCCAAGGG GAGCATTTCT
  Y
  ATACACCAGT GAAAACAGGA AGTGATGATG AAGCTAGTTT GCCTTGCATC TGCGCTGAAC
  TACTTTCTTT TTGTCATTCT TCATTAGGTT TAGACACGTG TGCCGGTCCA CGCGGTAGGA
  CCTCCGTTTC TACCTGCTTT GTACTTCCTC CAGTCACACA ATGCCGCCGC CTTCGGACAT
  CGTGAAGGTG GCCATAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39078184	mCV27590380	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51076115	NES14368655	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	T
ss148761281	ENSMUSSNP1435508	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29514594					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076115	NES14368655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	within coordinates
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	1036 bp distal
Rr270988	regulatory region 270988	236 bp distal
Rr270989	regulatory region 270989	365 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	within coordinates
Tssr118580	transcription start site region 118580	277 bp downstream
Tssr118581	transcription start site region 118581	255 bp downstream
Tssr118582	transcription start site region 118582	21 bp upstream
Tssr118583	transcription start site region 118583	56 bp upstream
Tssr118584	transcription start site region 118584	137 bp upstream
Tssr118585	transcription start site region 118585	150 bp upstream