rs29515163 SNP Detail

Summary

• ID
  rs29515163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23923989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG TAGCTGCCGG AACGACTAGC
  Y
  TGCACAGTTA AGTTGGACTC GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39078103	mCV22703084	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss47383468	NES11348870	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		C	T	T	C		C	T		C
ss148807846	ENSMUSSNP2318869	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss324291275	CHEV_13_23831875	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29515163					SNP	T	T	T	T	C	T	C	C	T	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383468	NES11348870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23923989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	within coordinates
H1f2	H1.2 linker histone, cluster member	mRNA-UTR
Rr369656	regulatory region 369656	within coordinates
Rr388130	regulatory region 388130	1650 bp upstream
Rr475930	regulatory region 475930	1188 bp distal
Rr475931	regulatory region 475931	820 bp distal
Rr475932	regulatory region 475932	1805 bp proximal
Tssr118854	transcription start site region 118854	1197 bp downstream
Tssr118855	transcription start site region 118855	808 bp downstream
Tssr118856	transcription start site region 118856	71 bp downstream
Tssr118857	transcription start site region 118857	120 bp upstream