rs29515386 SNP Detail

Summary

• ID
  rs29515386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48045707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG CCAGGCTTGG TGGCACATGC
  Y
  TTTAATCCCA GCACTCGGGA GGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39576444	mCV24600892	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145709091	ENSMUSSNP1156199	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325406580	CHEV_17_47871731	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29515386					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48045707 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	304 bp downstream
Rr528107	regulatory region 528107	1758 bp proximal
Tssr145030	transcription start site region 145030	1817 bp downstream
Tssr145031	transcription start site region 145031	1809 bp downstream
Tssr145032	transcription start site region 145032	1724 bp downstream
Tssr145033	transcription start site region 145033	1722 bp downstream
Tssr145034	transcription start site region 145034	1711 bp downstream
Tssr145035	transcription start site region 145035	1027 bp downstream
Tssr145036	transcription start site region 145036	998 bp downstream
Tssr145037	transcription start site region 145037	971 bp downstream
Tssr145038	transcription start site region 145038	952 bp downstream
Tssr145039	transcription start site region 145039	581 bp downstream
Tssr145040	transcription start site region 145040	547 bp downstream
Tssr145041	transcription start site region 145041	535 bp downstream
Tssr145042	transcription start site region 145042	484 bp downstream
Tssr145043	transcription start site region 145043	458 bp downstream
Tssr145044	transcription start site region 145044	445 bp downstream
Tssr145045	transcription start site region 145045	428 bp downstream
Tssr145046	transcription start site region 145046	377 bp downstream
Tssr145047	transcription start site region 145047	361 bp downstream
Tssr145048	transcription start site region 145048	341 bp downstream
Tssr148475	transcription start site region 148475	1732 bp upstream
Tssr148476	transcription start site region 148476	1705 bp upstream
Tssr148477	transcription start site region 148477	1672 bp upstream
Tssr148478	transcription start site region 148478	972 bp upstream
Tssr148479	transcription start site region 148479	920 bp upstream
Tssr148480	transcription start site region 148480	454 bp upstream
Tssr148481	transcription start site region 148481	418 bp upstream
Tssr148482	transcription start site region 148482	301 bp upstream