rs29515579 SNP Detail

Summary

• ID
  rs29515579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111886548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTGGTG GGGCACGCCT
  GTGATTCCAG CACTCAGGAG GCAGACATAG GCAGATCTCT GTGTTTAAGG CCAGCCAGGA
  CGATATAGAG ACCCAGTCAC CCCTCTCTCC CAAACGAAAC AAATTAGGGA GTCAGCTCAG
  TGGCTGAGAC CGCTTGCTGT GCAAGCCTGA TGGTGGGCCT GAGCTGGGGT CCCAGACCCC
  R
  TGATCCCCAC GTAGAAAGCC AGTAGTTCTA CAGAGGGACC AGGTGCAGGA GAATGCCCTG
  GAGTAGAAGT CCTGGAGCAG TGTGGTGCAG TTCCACAAGA TGAAGAGTGA GGACTGGCAC
  CTCAGGCTGT CCTCTTATCT CCATGTGTCA TGGCATGCAC ATACCCTCAC ATGCACACAC
  ACACACACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39078010	mCV24613965	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29515579					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111886548 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Tssr124031	transcription start site region 124031	1787 bp upstream
Tssr124032	transcription start site region 124032	1576 bp upstream