rs29515956 SNP Detail

Summary

• ID
  rs29515956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:122297266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAGGAC AGGGGGACGC
  TGCCGCGTTC AGCGAGCACC CGCCAGGTAG GTGCTGTGTT GTTATTATCC TGGAAGTGGG
  TTTCGCAAGA GAAACTCCCA AGACCTCGCT GGACCAAGAA TTAACAGTTA AAAGTCAGGT
  TTCAAACCCC GGGGTAGCTA GGAACCTAGA GAGAACCTGC CGCCTTCCAA CTGTTCACCC
  Y
  GTGGGAACCC AGGATGTCCA GTGGTTGAGG AGAGGTTCAA AAACAAAAAC CCAGCTTTCC
  TTTTGTCCGA CTTGGGGGTT TCTGCCGTGT GGTTTCCTAC TTTGGAGATT TCAAATTTGA
  CATAGGTCTG GATCCTGCTA ATCACAGATC CCACAACATC CGCTGAAGCT AAAGAGGAGA
  AGATCCAGTA ACCTTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45823670	mCV22536796	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss149186881	ENSMUSSNP2713996	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321668911	CHEV_5_122609212	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29515956					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122297266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm73495	predicted gene, 73495			1137 bp upstream
Ppp1cc	protein phosphatase 1 catalytic subunit gamma			Intron
				Noncoding-Transcript-Variant
Rr619791	regulatory region 619791			1148 bp distal
Rr619792	regulatory region 619792			837 bp distal
Rr619793	regulatory region 619793			within coordinates
Tssr48638	transcription start site region 48638			863 bp downstream